Description

LIM homeobox 3 [Source:HGNC Symbol;Acc:HGNC:6595]

INSDC coordinates

chromosome:GRCh38:CM000671.2:136196250:136205109:1

About this gene

This gene has 3 transcripts (splice variants), 55 orthologues, 11 paralogues, is a member of 1 Ensembl protein family and is associated with 4 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
LHX3-002ENST000003717462403402aaENSP00000360811
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS6995F1T0D9 Q9UBR4 NM_014564
NP_055379
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

LHX3-001ENST000003717482365397aaENSP00000360813
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS6994F1T0D5 Q9UBR4 NM_178138
NP_835258
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
LHX3-201ENST000006195872698386aaENSP00000483080
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F1T0D7 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).

Gene-based displays