Description

LIM homeobox 2 [Source:HGNC Symbol;Acc:HGNC:6594]

Synonyms

hLhx2, LH-2

INSDC coordinates

chromosome:GRCh38:CM000671.2:124001670:124033301:1

About this gene

This gene has 4 transcripts (splice variants), 61 orthologues, 11 paralogues, is a member of 1 Ensembl protein family and is associated with 47 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
LHX2-001ENST000003736152554406aaENSP00000362717
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS6853P50458 NM_004789
NP_004780
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P2

PRINCIPAL2 - APPRIS candidate principal isoform (CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

LHX2-002ENST000004464801414412aaENSP00000394978
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H7C0H1 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS ALT1

ALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

LHX2-003ENST000004886741266115aaENSP00000476200
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-U3KQT5 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

LHX2-004ENST00000560961471147aaENSP00000453448
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0YM35 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays