Description

homeobox A6 [Source:HGNC Symbol;Acc:HGNC:5107]

Synonyms

HOX1, HOX1B

Location
INSDC coordinates

chromosome:GRCh38:CM000669.2:27145396:27150603:1

About this gene

This gene has 2 transcripts (splice variants), 49 orthologues, 15 paralogues, is a member of 1 Ensembl protein family and is associated with 46 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
HOXA6-001ENST00000222728989233aaENSP00000222728
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5407P31267 NM_024014
NP_076919
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

HOXA6-002ENST00000521478814No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays