Description

SIX homeobox 4 [Source:HGNC Symbol;Acc:HGNC:10890]

Synonyms

AREC3

Location
INSDC coordinates

chromosome:GRCh38:CM000676.2:60709528:60724348:1

About this gene

This gene has 3 transcripts (splice variants), 66 orthologues, 5 paralogues, is a member of 1 Ensembl protein family and is associated with 98 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
SIX4-001ENST000002165136285781aaENSP00000216513
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS9749Q9UIU6 NM_017420
NP_059116
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
SIX4-004ENST000005569521573494aaENSP00000450761
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G3V2N2 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SIX4-002ENST000005540792003No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays