Description

estrogen receptor 1 [Source:HGNC Symbol;Acc:HGNC:3467]

Synonyms

Era, ESR, NR3A1

INSDC coordinates

chromosome:GRCh38:CM000668.2:151656691:152129619:1

Transcripts

This gene has 13 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
ESR1-201ENST000004409736466595 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5234B6DU67 C7FFR5 C8CJL0
E3WH18 G4XH65 K4PX46
K4PXX0 K4Q331 K7R989
P03372 Q5T5H8 Q9UBT1
Q9UE35
NM_001122742
NM_001291230
NM_001291241
NP_001116214
NP_001278159
NP_001278170
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
ESR1-001ENST000002062496458595 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5234B6DU67 C7FFR5 C8CJL0
E3WH18 G4XH65 K4PX46
K4PXX0 K4Q331 K7R989
P03372 Q5T5H8 Q9UBT1
Q9UE35
NM_000125
NM_001122741
NM_001291230
NM_001291241
NP_000116
NP_001116213
NP_001278159
NP_001278170
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
ESR1-202ENST000004434276357595 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5234B6DU67 C7FFR5 C8CJL0
E3WH18 G4XH65 K4PX46
K4PXX0 K4Q331 K7R989
P03372 Q5T5H8 Q9UBT1
Q9UE35
NM_001122740
NP_001116212
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
ESR1-002ENST000003387993335595 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5234B6DU67 C7FFR5 C8CJL0
E3WH18 G4XH65 K4PX46
K4PXX0 K4Q331 K7R989
P03372 Q5T5H8 Q9UBT1
Q9UE35
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
ESR1-008ENST000004275315436310 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B6DU67 C7FFR5 H0Y4W6
K4Q331
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ESR1-203ENST000004564831368152 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-K4PX46 K7R989 Q5T5H8
Q9H2M2 Q9UBT1 Q9UE35
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ESR1-009ENST000004065991251334 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-K4PX46 K7R989 Q5T5H8
Q9H2M1 Q9UBT1 Q9UE35
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ESR1-007ENST00000446550731115 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-K4PX46 K7R989 Q5T5H8
Q9UBT1 Q9UE35
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

ESR1-004ENST0000040474262484 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-K4PX46 Q5T5H8 Q9UBT1
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

ESR1-010ENST00000415488323107 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B0QYW7 -CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

ESR1-003ENST00000482101641No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

ESR1-006ENST00000488573530No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

ESR1-005ENST00000473497219No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays