Description

cadherin 19, type 2 [Source:HGNC Symbol;Acc:HGNC:1758]

Synonyms

CDH7

Location
INSDC coordinates

chromosome:GRCh38:CM000680.2:66501083:66604138:1

About this gene

This gene has 5 transcripts (splice variants), 56 orthologues, 12 paralogues, is a member of 2 Ensembl protein families and is associated with 193 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
CDH19-001ENST000002621506341772aaENSP00000262150
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11994Q9H159 NM_021153
NP_066976
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

CDH19-005ENST000005400861963490aaENSP00000439593
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS59325Q9H159 NM_001271028
NP_001257957
TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
CDH19-003ENST000004546421677434aaENSP00000401998
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8VVI9 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

CDH19-006ENST0000058015758765aaENSP00000464477
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-J3QS15 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

CDH19-002ENST000005796582588541aaENSP00000463085
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-J3KTP3 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays