Description

solute carrier family 45, member 4 [Source:HGNC Symbol;Acc:HGNC:29196]

Synonyms

KIAA1126

INSDC coordinates

chromosome:GRCh38:CM000670.2:141207166:141308305:1

Transcripts



This gene has 6 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
SLC45A4-002ENST000005190677483717 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS69550E5RJM7 Q5BKX6 SLC45A4-002
NM_001286648
NP_001273577
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SLC45A4-001ENST000000240613546798 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS34948E5RJM7 Q5BKX6 SLC45A4-001
NM_001080431
NP_001073900
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
SLC45A4-003ENST000005178783470808 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS75795E5RJM7 E7EV90 J3KQI8
SLC45A4-003
NM_001286646
NP_001273575
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SLC45A4-005ENST0000052013783596 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E5RJM7 SLC45A4-005 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SLC45A4-004ENST00000519986542102 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E5RGN5 SLC45A4-004 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SLC45A4-006ENST00000521804726No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
-SLC45A4-006 -TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays