Description

short stature homeobox [Source:HGNC Symbol;Acc:HGNC:10853]

Synonyms

GCFX, PHOG, SHOXY, SS

Location

Chromosome X: 624,344-659,411 forward strand.

This gene is mapped to the following HAP/PARs:

INSDC coordinates

chromosome:GRCh38:CM000685.2:624344:659411:1

Transcripts

This gene has 4 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
SHOX-202ENST000003815783757292 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14107A0A024R385 O15266 NM_000451
NP_000442
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
SHOX-201ENST000003340601951225 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14106O15266 NM_006883
NP_006874
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SHOX-003ENST000005549711902292 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14107A0A024R385 O15266 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
SHOX-001ENST000003815751351225 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14106O15266 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene-based displays