Description

short stature homeobox [Source:HGNC Symbol;Acc:HGNC:10853]

Synonyms

GCFX, PHOG, SHOXY, SS

Location

Chromosome X: 624,344-659,411 forward strand.

This gene is mapped to the following HAP/PARs:

INSDC coordinates

chromosome:GRCh38:CM000685.2:624344:659411:1

About this gene

This gene has 4 transcripts (splice variants), 44 orthologues, 14 paralogues, is a member of 1 Ensembl protein family and is associated with 8 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
SHOX-202ENST000003815783757292aaENSP00000370990
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14107A0A024R385 O15266 NM_000451
NP_000442
TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

SHOX-201ENST000003340601951225aaENSP00000335505
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14106O15266 NM_006883
NP_006874
TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SHOX-003ENST000005549711902292aaENSP00000452016
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14107A0A024R385 O15266 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

SHOX-001ENST000003815751351225aaENSP00000370987
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14106O15266 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Genomic alignments
Gene tree
Orthologues
Paralogues
Families

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene-based displays