Genomic context
A top panel shows information specific to the variant. Read more about the top panel in this help page.
The genomic context display shows the region of the structural variant with associated annotation along the genome. The selected variant is shown in a 20 kb region along with surrounding variations, transcripts and regulatory features in a similar way to the region in detail view. The variants are staggered in multiple rows where they overlap. The blue bar shows how the genomic assembly is composed of individual contigs.
In Configure this page you can modify the width of the region and select or deselect variation and regulatory feature types shown.
Below the image are tables listing the features in the image that overlap the region displayed. All tables can be sorted by position or name.
Specific tables include:
- Structural variants
- Copy number variant probes
- Regulatory features (from Ensembl Regulation)
- Constrained elements (calculated by Ensembl Compara)
For background information on variation types and sources, see this article.