Transcript: ENSDART00000148197.3 ctnnd2a-202

Description

catenin (cadherin-associated protein), delta 2a [Source:ZFIN;Acc:ZDB-GENE-030616-60]

Gene Synonyms

ctnnd2, si:bz21d15.1

Location

About this transcript

This transcript has 20 exons, is annotated with 34 domains and features, is associated with 7806 variant alleles and maps to 255 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000179403.2	ctnnd2a-203	9210	1221aa	ENSDARP00000143267.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286Y804	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148197.3	ctnnd2a-202	5091	1179aa	ENSDARP00000121327.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R306	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000142587.2	ctnnd2a-201	650	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 5,091 bps, Translation length: 1,179 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000148197.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.