Transcript: ENSDART00000146112.3 hps1-203

Description

HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 [Source:ZFIN;Acc:ZDB-GENE-051113-152]

Gene Synonyms

im:7143944, zgc:123240

Location

About this transcript

This transcript has 4 exons, is associated with 170 variant alleles and maps to 32 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000109822.4	hps1-201	4642	668aa	ENSDARP00000100186.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6PFK5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000146112.3	hps1-203	310	56aa	ENSDARP00000115998.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A4P2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000143506.2	hps1-202	827	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 310 bps, Translation length: 56 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000146112.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.