Transcript: ENSDART00000140341.2 tcf7l1a-203

Description

transcription factor 7 like 1a [Source:NCBI gene;Acc:30523]

Gene Synonyms

HMG-box transcription factor, hdl, headless, tcf-3, tcf3, tcf3a

Location

About this transcript

This transcript has 9 exons, is annotated with 21 domains and features, is associated with 1099 variant alleles and maps to 134 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000099262.4	tcf7l1a-201	2695	560aa	ENSDARP00000090035.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9YHE8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000140341.2	tcf7l1a-203	1803	431aa	ENSDARP00000118493.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QMG3	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000138594.2	tcf7l1a-202	708	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,803 bps, Translation length: 431 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000140341.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.