Transcript: ENSDART00000138262.2 tiam1a-203

Description

TIAM Rac1 associated GEF 1a [Source:ZFIN;Acc:ZDB-GENE-080325-1]

Gene Synonyms

tiam1

Location

Chromosome 10: 25,574,557-25,575,573 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 249 variant alleles and maps to 74 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000078430.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000110751.5	tiam1a-201	7107	1621aa	ENSDARP00000101604.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FBR4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000143978.3	tiam1a-204	6328	1572aa	ENSDARP00000112941.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QCV1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000131640.2	tiam1a-202	800	260aa	ENSDARP00000115547.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QG36	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000138262.2	tiam1a-203	727	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 727 bps,

Version

ENSDART00000138262.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000138262.2 tiam1a-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000138262.2 tiam1a-203

Summary

About Us

Get help

Our sister sites

Follow us