Transcript: ENSDART00000136919.3 casp6b.1-201

Description

caspase 6b.1, apoptosis-related cysteine peptidase [Source:ZFIN;Acc:ZDB-GENE-041010-48]

Gene Synonyms

casp6b, casp6l1, caspase-6b, zgc:103604

Location

Chromosome 3: 32,954,169-32,958,574 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 18 domains and features, is associated with 45 variant alleles and maps to 245 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000025608.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000136919.3	casp6b.1-201	1235	249aa	ENSDARP00000113324.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RB78	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000183902.1	casp6b.1-204	2647	249aa	ENSDARP00000150690.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RB78	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000147374.3	casp6b.1-203	794	253aa	ENSDARP00000123520.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QBR7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000146586.2	casp6b.1-202	783	168aa	ENSDARP00000114638.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QET6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 1,235 bps, Translation length: 249 residues

Version

ENSDART00000136919.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000136919.3 casp6b.1-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000136919.3 casp6b.1-201

Summary

About Us

Get help

Our sister sites

Follow us