Transcript: ENSDART00000134482.3 terf1-201

Description

telomeric repeat binding factor (NIMA-interacting) 1 [Source:ZFIN;Acc:ZDB-GENE-090612-2]

Gene Synonyms

wu:fb74c04

Location

About this transcript

This transcript has 10 exons, is annotated with 15 domains and features, is associated with 330 variant alleles and maps to 192 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000134482.3	terf1-201	1543	365aa	ENSDARP00000118728.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QKQ7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000164729.2	terf1-204	2900	306aa	ENSDARP00000135133.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2KRV3	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000139212.2	terf1-202	909	303aa	ENSDARP00000120064.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QDP9	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000144292.2	terf1-203	667	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,543 bps, Translation length: 365 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000134482.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.