Transcript: ENSDART00000134241.3 olfm1a-203

Description

olfactomedin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-194]

Gene Synonyms

zgc:111962, zgc:92854

Location

Chromosome 5: 64,732,270-64,775,757 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 13 domains and features, is associated with 1381 variant alleles and maps to 245 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000018270.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000002908.8	olfm1a-201	1681	485aa	ENSDARP00000008954.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2AWU1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000134241.3	olfm1a-203	1374	457aa	ENSDARP00000115558.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2AWU3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000135610.3	olfm1a-204	998	153aa	ENSDARP00000118279.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2AWU2	-
ENSDART00000161112.2	olfm1a-205	967	95aa	ENSDARP00000132015.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IB83	-
ENSDART00000073950.6	olfm1a-202	923	125aa	ENSDARP00000068440.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DGM5	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,374 bps, Translation length: 457 residues

Version

ENSDART00000134241.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000134241.3 olfm1a-203

Summary

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Transcript: ENSDART00000134241.3 olfm1a-203

Summary

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