Transcript: ENSDART00000133760.2 hoxc11a-202

Description

homeobox C11a [Source:NCBI gene;Acc:30403]

Gene Synonyms

hoxc11, id:ibd3176, zgc:110834

Location

About this transcript

This transcript has 2 exons, is annotated with 20 domains and features, is associated with 95 variant alleles and maps to 316 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000103146.4	hoxc11a-201	1512	306aa	ENSDARP00000093920.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0H2UKF6 B2GQI4 Q58EL0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000133760.2	hoxc11a-202	1955	302aa	ENSDARP00000120202.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2BE67	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 1,955 bps, Translation length: 302 residues

Version

ENSDART00000133760.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.