Transcript: ENSDART00000132683.2 rps13-202

Description

ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]

Gene Synonyms

fb14f11, fd13f08, fd60g01, wu:fb14f11, wu:fd13f08, wu:fd60g01, zgc:91809

Location

About this transcript

This transcript has 6 exons, is associated with 478 variant alleles and maps to 93 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000052730.6	rps13-201	564	151aa	ENSDARP00000052729.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6IMW6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000132683.2	rps13-202	525	121aa	ENSDARP00000124858.1	Nonsense mediated decay	F8W246	-
ENSDART00000173822.2	rps13-203	721	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 525 bps, Translation length: 121 residues

Version

ENSDART00000132683.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.