Transcript: ENSDART00000125484.3 trmt11-202

Description

tRNA methyltransferase 11 homolog [Source:ZFIN;Acc:ZDB-GENE-040426-953]

Gene Synonyms

zgc:56233

Location

Chromosome 16: 40,043,707-40,074,142 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 12 domains and features, is associated with 568 variant alleles and maps to 166 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000040033.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000102552.5	trmt11-201	1555	466aa	ENSDARP00000093328.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R1R2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000125484.3	trmt11-202	1397	384aa	ENSDARP00000111331.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QJ34	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000132457.3	trmt11-203	1082	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000139652.2	trmt11-204	869	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 1,397 bps, Translation length: 384 residues

Version

ENSDART00000125484.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000125484.3 trmt11-202

Summary

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Transcript: ENSDART00000125484.3 trmt11-202

Summary

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