Transcript: ENSDART00000111832.5 atl1-202

Description

atlastin GTPase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8003]

Gene Synonyms

fj46c01, wu:fj46c01

Location

Chromosome 13: 36,764,715-36,784,400 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 13 domains and features, is associated with 285 variant alleles and maps to 274 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000060481.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000111832.5	atl1-202	2156	554aa	ENSDARP00000101056.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A6H1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000085230.6	atl1-201	1680	559aa	ENSDARP00000079665.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QGX9	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000146696.2	atl1-203	407	136aa	ENSDARP00000116645.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R155	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 2,156 bps, Translation length: 554 residues

Version

ENSDART00000111832.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000111832.5 atl1-202

Summary

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Transcript: ENSDART00000111832.5 atl1-202

Summary

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