Transcript: ENSDART00000110167.4 rpap1-201

Description

RNA polymerase II associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-090914-1]

Location

About this transcript

This transcript has 25 exons, is annotated with 20 domains and features, is associated with 855 variant alleles and maps to 139 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000110167.4	rpap1-201	4387	1406aa	ENSDARP00000100448.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FGQ5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000191092.1	rpap1-202	4546	1439aa	ENSDARP00000156664.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QPS2	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

Summary

Statistics

Exons: 25, Coding exons: 25, Transcript length: 4,387 bps, Translation length: 1,406 residues

Version

ENSDART00000110167.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.