Transcript: ENSDART00000109107.5 csrnp1b-202

Description

cysteine-serine-rich nuclear protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-1515]

Gene Synonyms

DrAXUD1, axud1, csrnp1l, csrnpl, fb73e11, wu:fb73e11, zgc:66340

Location

Chromosome 24: 19,707,609-19,718,077 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 19 domains and features, is associated with 121 variant alleles and maps to 139 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000038429.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000109107.5	csrnp1b-202	1836	566aa	ENSDARP00000098740.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QH67	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000056082.5	csrnp1b-201	1538	433aa	ENSDARP00000056081.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QNJ1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000135405.2	csrnp1b-204	808	201aa	ENSDARP00000112890.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QDT1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000133889.2	csrnp1b-203	399	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,836 bps, Translation length: 566 residues

Version

ENSDART00000109107.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000109107.5 csrnp1b-202

Summary

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Transcript: ENSDART00000109107.5 csrnp1b-202

Summary

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