Transcript: ENSDART00000105461.4 rom1b-201

Description

retinal outer segment membrane protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1073]

Gene Synonyms

zgc:56548

Location

About this transcript

This transcript has 6 exons, is annotated with 19 domains and features, is associated with 834 variant alleles and maps to 241 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000105461.4	rom1b-201	1590	352aa	ENSDARP00000096234.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R4E0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000183505.1	rom1b-202	2722	352aa	ENSDARP00000145799.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R4E0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 1,590 bps, Translation length: 352 residues

Version

ENSDART00000105461.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.