Transcript: ENSDART00000100234.6 col2a1a-202

Description

collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]

Gene Synonyms

col2a1, coll2a1, fb38c06, fc10c01, wu:fb38c06, wu:fc10c01

Location

About this transcript

This transcript has 54 exons, is annotated with 61 domains and features, is associated with 829 variant alleles and maps to 224 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000100234.6	col2a1a-202	5937	1491aa	ENSDARP00000091007.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q2LDA1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000091307.6	col2a1a-201	5723	1421aa	ENSDARP00000085740.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DLK0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 54, Coding exons: 54, Transcript length: 5,937 bps, Translation length: 1,491 residues

Version

ENSDART00000100234.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.