Transcript: ENSDART00000099738.6 lrrfip2-202

Description

leucine rich repeat (in FLII) interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7781]

Gene Synonyms

wu:fj34c02, zgc:113956

Location

Chromosome 13: 42,621,205-42,673,989 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 20 domains and features, is associated with 1400 variant alleles and maps to 262 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000010400.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000099738.6	lrrfip2-202	2242	405aa	ENSDARP00000090511.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6PGV0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000169083.2	lrrfip2-206	2326	429aa	ENSDARP00000135819.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IMS4	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000099729.5	lrrfip2-201	1235	161aa	ENSDARP00000090502.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q4V969	-
ENSDART00000133848.3	lrrfip2-203	509	131aa	ENSDARP00000122794.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NRL4	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000145745.3	lrrfip2-205	1006	227aa	ENSDARP00000123994.1	Nonsense mediated decay	F8W449	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000141115.2	lrrfip2-204	529	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 2,242 bps, Translation length: 405 residues

Version

ENSDART00000099738.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000099738.6 lrrfip2-202

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Transcript: ENSDART00000099738.6 lrrfip2-202

Summary

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