Transcript: ENSDART00000077296.7 col4a1-201

Description

collagen, type IV, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-081105-114]

Gene Synonyms

fj65e07, im:7157877, si:ch211-174g17.1, wu:fj65e07

Location

About this transcript

This transcript has 50 exons, is annotated with 72 domains and features, is associated with 1112 variant alleles and maps to 154 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000077296.7	col4a1-201	5961	1583aa	ENSDARP00000071763.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q8S5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000130442.3	col4a1-202	3954	1317aa	ENSDARP00000111488.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QG79	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 50, Coding exons: 50, Transcript length: 5,961 bps, Translation length: 1,583 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000077296.7

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.