Transcript: ENSDART00000074362.6 pcdh18b-201

Description

protocadherin 18b [Source:ZFIN;Acc:ZDB-GENE-080804-1]

Gene Synonyms

fj19f12, pcdh18, wu:fj19f12

Location

About this transcript

This transcript has 4 exons, is annotated with 58 domains and features, is associated with 345 variant alleles and maps to 191 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000074362.6	pcdh18b-201	4372	1150aa	ENSDARP00000068851.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QGL4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148544.3	pcdh18b-202	3645	1132aa	ENSDARP00000124086.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W3H1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 4,372 bps, Translation length: 1,150 residues

Version

ENSDART00000074362.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.