Transcript: ENSDART00000055492.7 ddx5-201

Description

DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]

Gene Synonyms

wu:fa56a07, wu:fb11e01, wu:fb16c10, wu:fb53b05

Location

Chromosome 3: 25,269,861-25,275,403 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 28 domains and features, is associated with 554 variant alleles and maps to 290 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000038068.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000055492.7	ddx5-201	2513	617aa	ENSDARP00000055491.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q5L6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000163782.2	ddx5-206	3060	488aa	ENSDARP00000132531.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0JZJ1	-
ENSDART00000145420.3	ddx5-204	2230	496aa	ENSDARP00000121201.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NWH7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000133718.2	ddx5-202	744	217aa	ENSDARP00000122701.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QG17	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000147965.2	ddx5-205	372	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000145315.2	ddx5-203	1965	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 2,513 bps, Translation length: 617 residues

Version

ENSDART00000055492.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000055492.7 ddx5-201

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Transcript: ENSDART00000055492.7 ddx5-201

Summary

About Us

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