Transcript: ENSDART00000053267.6 hnrnpa1b-201

Description

heterogeneous nuclear ribonucleoprotein A1b [Source:ZFIN;Acc:ZDB-GENE-030912-14]

Gene Synonyms

hnrnpa1, hnrpa1

Location

About this transcript

This transcript has 11 exons, is annotated with 16 domains and features, is associated with 114 variant alleles and maps to 236 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000053267.6	hnrnpa1b-201	1564	403aa	ENSDARP00000053266.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QFV2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000131711.2	hnrnpa1b-203	620	65aa	ENSDARP00000119496.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R2T6	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000134607.2	hnrnpa1b-204	473	120aa	ENSDARP00000121434.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R4I4	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000127174.4	hnrnpa1b-202	1005	281aa	ENSDARP00000108932.2	Nonsense mediated decay	F1QS20	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 1,564 bps, Translation length: 403 residues

Version

ENSDART00000053267.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.