Transcript: ENSDART00000052584.7 trpm1a-201

Description

transient receptor potential cation channel, subfamily M, member 1a [Source:ZFIN;Acc:ZDB-GENE-070112-1372]

Gene Synonyms

trpm1, trpm1b, zgc:158632

Location

About this transcript

This transcript has 26 exons, is annotated with 32 domains and features, is associated with 1011 variant alleles and maps to 260 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000052584.7	trpm1a-201	5842	1546aa	ENSDARP00000052583.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FDL5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000140938.3	trpm1a-203	1351	297aa	ENSDARP00000119856.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QDA0	-
ENSDART00000086664.5	trpm1a-202	964	319aa	ENSDARP00000081099.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R432	-
ENSDART00000147251.2	trpm1a-204	872	191aa	ENSDARP00000122928.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QJ88	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 26, Coding exons: 25, Transcript length: 5,842 bps, Translation length: 1,546 residues

Version

ENSDART00000052584.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.