Transcript: ENSDART00000048277.8 copa-201

Description

coatomer protein complex, subunit alpha [Source:ZFIN;Acc:ZDB-GENE-020905-2]

Gene Synonyms

cb281, fb13c12, sneezy, wu:fb13c12

Location

About this transcript

This transcript has 29 exons, is annotated with 39 domains and features, is associated with 533 variant alleles and maps to 197 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000048277.8	copa-201	4131	1224aa	ENSDARP00000048276.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QDQ1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000176827.2	copa-205	2062	538aa	ENSDARP00000143620.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286Y8Z3	-
ENSDART00000111382.4	copa-202	784	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000136159.3	copa-203	717	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000138874.2	copa-204	791	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 29, Coding exons: 29, Transcript length: 4,131 bps, Translation length: 1,224 residues

Version

ENSDART00000048277.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.