Transcript: ENSDART00000046981.6 pdlim1-201

Description

PDZ and LIM domain 1 (elfin) [Source:ZFIN;Acc:ZDB-GENE-030131-5227]

Gene Synonyms

clim1, elfin, wu:fa19a03, wu:fy34f10, zgc:110681

Location

About this transcript

This transcript has 7 exons, is annotated with 21 domains and features, is associated with 105 variant alleles and maps to 392 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000046981.6	pdlim1-201	1724	322aa	ENSDARP00000046980.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A5V6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000131792.2	pdlim1-202	378	126aa	ENSDARP00000114036.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A5V5	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000145640.2	pdlim1-203	883	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,724 bps, Translation length: 322 residues

Version

ENSDART00000046981.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.