Transcript: ENSDART00000036680.8 ptgr1-201

Description

prostaglandin reductase 1 [Source:ZFIN;Acc:ZDB-GENE-041212-80]

Gene Synonyms

ltb4dh, wu:fj35e05, zgc:101689

Location

About this transcript

This transcript has 9 exons, is annotated with 12 domains and features, is associated with 288 variant alleles and maps to 183 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000036680.8	ptgr1-201	2249	329aa	ENSDARP00000038835.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QVB1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000137661.3	ptgr1-202	841	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000146784.2	ptgr1-204	790	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000141769.3	ptgr1-203	772	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 2,249 bps, Translation length: 329 residues

Version

ENSDART00000036680.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.