Transcript: ENSDART00000034829.9 rrp12-201

Description

ribosomal RNA processing 12 homolog [Source:ZFIN;Acc:ZDB-GENE-050706-182]

Gene Synonyms

im:7142677, im:7149218, zgc:111822

Location

About this transcript

This transcript has 34 exons, is annotated with 23 domains and features, is associated with 407 variant alleles and maps to 384 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000034829.9	rrp12-201	4193	1283aa	ENSDARP00000035419.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A4E7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000145887.2	rrp12-204	913	276aa	ENSDARP00000118584.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A5Y5	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000134343.3	rrp12-203	573	100aa	ENSDARP00000115270.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q8D9	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000130035.3	rrp12-202	773	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 34, Coding exons: 34, Transcript length: 4,193 bps, Translation length: 1,283 residues

Version

ENSDART00000034829.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.