Transcript: ENSDART00000033980.7 lims1-201

Description

LIM and senescent cell antigen-like domains 1 [Source:ZFIN;Acc:ZDB-GENE-050522-236]

Gene Synonyms

pinch1, wu:fc32c03, zgc:112533

Location

About this transcript

This transcript has 10 exons, is annotated with 38 domains and features, is associated with 640 variant alleles and maps to 343 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000033980.7	lims1-201	3817	336aa	ENSDARP00000035109.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QQT3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000179756.1	lims1-202	4355	325aa	ENSDARP00000149833.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q6Q2	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 3,817 bps, Translation length: 336 residues

Version

ENSDART00000033980.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

RNA-Seq supported partial [Definitions]