Transcript: ENSDART00000029599.8 mtmr1b-201

Description

myotubularin related protein 1b [Source:ZFIN;Acc:ZDB-GENE-050327-48]

Gene Synonyms

wu:fi27f12, zgc:113186

Location

Chromosome 21: 34,088,110-34,118,206 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 22 domains and features, is associated with 495 variant alleles and maps to 289 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000022378.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000029599.8	mtmr1b-201	2697	649aa	ENSDARP00000037012.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q58EE0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000170070.3	mtmr1b-205	2688	627aa	ENSDARP00000137127.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IMW4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000147519.2	mtmr1b-204	964	263aa	ENSDARP00000113703.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QID3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000145123.3	mtmr1b-203	804	179aa	ENSDARP00000123236.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QCN8	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000136008.2	mtmr1b-202	737	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 2,697 bps, Translation length: 649 residues

Version

ENSDART00000029599.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000029599.8 mtmr1b-201

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Transcript: ENSDART00000029599.8 mtmr1b-201

Summary

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