Transcript: ENSDART00000021520.10 eif4bb-201

Description

eukaryotic translation initiation factor 4Bb [Source:ZFIN;Acc:ZDB-GENE-030131-8563]

Gene Synonyms

fb15c09, wu:fb15c09, zgc:101532

Location

Chromosome 6: 39,064,824-39,080,630 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 25 domains and features, is associated with 416 variant alleles and maps to 157 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000010194.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000021520.10	eif4bb-201	2014	569aa	ENSDARP00000008894.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R183	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000128308.4	eif4bb-204	2274	632aa	ENSDARP00000105821.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q8G3	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000127365.3	eif4bb-202	788	128aa	ENSDARP00000105773.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QZF7	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000151424.2	eif4bb-205	538	32aa	ENSDARP00000125868.1	Nonsense mediated decay	I3ISI5	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000128034.3	eif4bb-203	668	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 2,014 bps, Translation length: 569 residues

Version

ENSDART00000021520.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000021520.10 eif4bb-201

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Transcript: ENSDART00000021520.10 eif4bb-201

Summary

About Us

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