Transcript: ENSDART00000019846.7 col8a1b-201

Description

collagen, type VIII, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-060503-140]

Gene Synonyms

col8a2, si:ch73-162i18.4

Location

About this transcript

This transcript has 2 exons, is annotated with 23 domains and features, is associated with 198 variant alleles and maps to 146 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000154717.3	col8a1b-202	3140	733aa	ENSDARP00000129340.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WGI4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000019846.7	col8a1b-201	2945	731aa	ENSDARP00000006367.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1L863	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000182377.1	col8a1b-203	2314	733aa	ENSDARP00000156329.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WGI4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 2,945 bps, Translation length: 731 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000019846.7

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.