Transcript: ENSDART00000002463.5 tmed5-201

Description

transmembrane p24 trafficking protein 5 [Source:ZFIN;Acc:ZDB-GENE-040426-1302]

Gene Synonyms

cgi100, cgi1000, p24 gamma 2, zgc:63936

Location

About this transcript

This transcript has 4 exons, is annotated with 9 domains and features, is associated with 509 variant alleles and maps to 181 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000002463.5	tmed5-201	1524	225aa	ENSDARP00000014840.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7T2E9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000164761.2	tmed5-202	2304	226aa	ENSDARP00000141271.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IWV5	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,524 bps, Translation length: 225 residues

Version

ENSDART00000002463.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.