Transcript: ENSDART00000129710.4 CRTAC1-201

Description

cartilage acidic protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9704]

Location

About this transcript

This transcript has 14 exons, is annotated with 18 domains and features, is associated with 376 variant alleles and maps to 216 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000129710.4	CRTAC1-201	2103	546aa	ENSDARP00000111754.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1XF92	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000147212.2	CRTAC1-202	515	86aa	ENSDARP00000123153.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000133140.2	CRTAC1-203	836	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 14, Coding exons: 13, Transcript length: 2,103 bps, Translation length: 546 residues

Version

ENSDART00000129710.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.