Description

paired box 6b [Source:ZFIN;Acc:ZDB-GENE-001031-1]

Synonyms

cb566, fc09c10, id:ibd5095, Pax6.2, sri(l), wu:fc09c10, wu:fc33g08

AN, AN2, D11S812E, WAGR

Location
About this transcript

This transcript has 12 exons, is annotated with 25 domains and features, is associated with 4 variations and maps to 7 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeUniProtRefSeqFlags
pax6b-001ENSDART000001459464993437aaENSDARP00000115545
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
Q9YHZ8 NP_571716
APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

pax6b-202ENSDART000001657574959450aaENSDARP00000136269
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--APPRIS P5

PRINCIPAL5 - APPRIS candidate principal isoform (longest coding sequence).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

pax6b-201ENSDART000000145721560382aaENSDARP00000019067
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
F1QKK6 -
pax6b-005ENSDART0000014476557899aaENSDARP00000113616
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
A2BDM0 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
pax6b-009ENSDART00000163323571134aaENSDARP00000141728
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
pax6b-003ENSDART0000014670455768aaENSDARP00000116680
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
A2BDM1 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
pax6b-004ENSDART0000013469639481aaENSDARP00000115187
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
A2BDM0 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
pax6b-006ENSDART00000137235683No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
--
pax6b-007ENSDART00000138689681No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
--
pax6b-008ENSDART00000161608830No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Statistics

Exons: 12 Coding exons: 11 Transcript length: 4,993 bps Translation length: 437 residues

Ensembl version

ENSDART00000145946.3

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:

Transcript-based displays