Description

alpha thalassemia/mental retardation syndrome X-linked homolog (human) [Source:ZFIN;Acc:ZDB-GENE-030912-11]

Synonyms

wu:fb26e12, wu:fb52h08, wu:fb72g09

JMS, RAD54, XH2, XNP

Location
About this transcript

This transcript has 12 exons, is annotated with 15 domains and features, is associated with 7 variations and maps to 5 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeUniProtRefSeqFlags
atrx-001ENSDART0000012586584162011aaENSDARP00000109014
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
F1QJ36 -APPRIS P5

PRINCIPAL5 - APPRIS candidate principal isoform (longest coding sequence).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

atrx-202ENSDART0000012759474832013aaENSDARP00000105895
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
E7F4M2 NM_200653
NP_956947
APPRIS P5

PRINCIPAL5 - APPRIS candidate principal isoform (longest coding sequence).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

atrx-201ENSDART000000619322795731aaENSDARP00000061931
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
F1QQ67 -
atrx-002ENSDART00000146030581No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Statistics

Exons: 12 Coding exons: 8 Transcript length: 2,795 bps Translation length: 731 residues

Ensembl version

ENSDART00000061932.5

Type

Known protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Frameshift introns

Frameshift intronsFrameshift introns are the length of 1, 2, 4, or 5 basepairs. They are introduced by the Ensembl genebuild in order to fit the cDNA sequence to the genome. occur at intron number(s) 9.

Transcript-based displays