Transcript: ENSDART00000122520.4 CHCHD3-201

Description

coiled-coil-helix-coiled-coil-helix domain containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-5005]

Location

Chromosome 4: 15,490,219-15,603,511 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 15 domains and features, is associated with 1668 variant alleles and maps to 369 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000032919.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000122520.4	CHCHD3-201	1611	317aa	ENSDARP00000105322.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RH04	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000162356.2	CHCHD3-203	1677	312aa	ENSDARP00000139417.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IUL1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000143317.2	CHCHD3-202	603	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,611 bps, Translation length: 317 residues

Version

ENSDART00000122520.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000122520.4 CHCHD3-201

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Transcript: ENSDART00000122520.4 CHCHD3-201

Summary

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