Description

ATPase, Ca++ transporting, cardiac muscle, fast twitch 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]

Synonyms

acc, accordion, cb279, serca, serca1, wu:cegs655, wu:fb17h11, wu:fb19b10, zgc:92110

Location
About this transcript

This transcript has 24 exons, is annotated with 41 domains and features, is associated with 3 variations and maps to 3 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeUniProtRefSeqFlags
atp2a1-201ENSDART000001625463497994aaENSDARP00000135633
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

atp2a1-001ENSDART0000004393233901005aaENSDARP00000043931
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
Q5U3A4 -APPRIS P5

PRINCIPAL5 - APPRIS candidate principal isoform (longest coding sequence).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

atp2a1-002ENSDART000001295613311994aaENSDARP00000109874
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
Q642Z0 NM_001007029
NP_001007030
APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

atp2a1-006ENSDART000001346471049103aaENSDARP00000115435
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
E9QGF0 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
atp2a1-007ENSDART0000014697950239aaENSDARP00000116177
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
E9QCD9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
atp2a1-005ENSDART0000014626741698aaENSDARP00000116872
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
E9QF60 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
atp2a1-004ENSDART00000139579348No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
--
atp2a1-003ENSDART00000148365520No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Statistics

Exons: 24 Coding exons: 23 Transcript length: 3,390 bps Translation length: 1,005 residues

Ensembl version

ENSDART00000043932.6

Type

Novel protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:

Transcript-based displays