Transcript: ENSDART00000148396.3 tgm2b-202

Description

transglutaminase 2b [Source:ZFIN;Acc:ZDB-GENE-030131-2576]

Gene Synonyms

fc12b04, wu:fc12b04, zgc:136700

Location

Chromosome 6: 2,093,367-2,117,753 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 13 domains and features, is associated with 561 variant alleles and maps to 176 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000074094.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000193770.1	tgm2b-203	3108	681aa	ENSDARP00000145506.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8PX12	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000114314.5	tgm2b-201	3320	679aa	ENSDARP00000099554.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1ECX3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000148396.3	tgm2b-202	1648	530aa	ENSDARP00000124522.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W327	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,648 bps, Translation length: 530 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000148396.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000148396.3 tgm2b-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000148396.3 tgm2b-202

Summary

About Us

Get help

Our sister sites

Follow us