Transcript: ENSDART00000133432.2 atp2a3-202

Description

ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3 [Source:ZFIN;Acc:ZDB-GENE-060531-103]

Gene Synonyms

si:dkey-205l20.1

Location

Chromosome 5: 31,214,341-31,269,170 forward strand.

About this transcript

This transcript has 18 exons, is annotated with 39 domains and features, is associated with 1252 variant alleles and maps to 150 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000060978.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000192271.1	atp2a3-203	5870	1005aa	ENSDARP00000154326.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QJH4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000086443.7	atp2a3-201	5899	991aa	ENSDARP00000080878.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q4P9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000133432.2	atp2a3-202	5467	932aa	ENSDARP00000121065.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2BIP1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 5,467 bps, Translation length: 932 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000133432.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000133432.2 atp2a3-202

Summary

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Transcript: ENSDART00000133432.2 atp2a3-202

Summary

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