Transcript: ENSDART00000132909.3 cacna1c-202

Description

calcium channel, voltage-dependent, L type, alpha 1C subunit [Source:ZFIN;Acc:ZDB-GENE-020129-1]

Gene Synonyms

C-LTCC, ZfCav1.2, isl, island beat

Location

About this transcript

This transcript has 48 exons, is annotated with 96 domains and features, is associated with 2002 variant alleles and maps to 194 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000132909.3	cacna1c-202	6852	2196aa	ENSDARP00000116425.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5TZF1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000028856.5	cacna1c-201	6753	2168aa	ENSDARP00000031067.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R1T3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 48, Coding exons: 48, Transcript length: 6,852 bps, Translation length: 2,196 residues

Version

ENSDART00000132909.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.