Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CDPF1 ENSDARG00000095705

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Description

si:ch211-239e6.4 [Source:NCBI gene;Acc:563220]

Gene Synonyms

zgc:136265, zgc:152667

Location

Chromosome 4: 18,597,162-18,606,573 reverse strand.

GRCz11:CM002888.2

About this gene

This gene has 7 transcripts (splice variants) and 178 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000173438.2	CDPF1-204	842	116aa	ENSDARP00000142576.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4I9K8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000137798.3	CDPF1-201	882	87aa	ENSDARP00000114819.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RGZ1	-
ENSDART00000172976.2	CDPF1-202	775	72aa	ENSDARP00000142450.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A140LGS1	-
ENSDART00000171450.2	CDPF1-207	659	116aa	ENSDARP00000129970.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4I9K8	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000184288.1	CDPF1-206	451	87aa	ENSDARP00000145478.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RGZ1	-
ENSDART00000141386.5	CDPF1-205	724	76aa	ENSDARP00000123930.2	Nonsense mediated decay	F8W4B2	-
ENSDART00000148271.2	CDPF1-203	558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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