Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: shroom1 ENSDARG00000094181

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Description

shroom family member 1 [Source:ZFIN;Acc:ZDB-GENE-091204-385]

Gene Synonyms

si:ch211-225b14.6

Location

Chromosome 21: 43,253,538-43,310,488 forward strand.

GRCz11:CM002905.2

About this gene

This gene has 3 transcripts (splice variants), 192 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000147026.3	shroom1-201	4265	1421aa	ENSDARP00000114452.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QJJ1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000179940.1	shroom1-203	8860	1266aa	ENSDARP00000149225.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q7X6	-
ENSDART00000164806.2	shroom1-202	4269	1347aa	ENSDARP00000139677.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4ITP7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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