Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: rp1l1a ENSDARG00000089458

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Description

rp1 like 1a [Source:ZFIN;Acc:ZDB-GENE-120711-1]

Gene Synonyms

rp1l1

Location

Chromosome 17: 5,768,608-5,822,120 forward strand.

GRCz11:CM002901.2

About this gene

This gene has 3 transcripts (splice variants), 73 orthologues, 2 paralogues and is associated with 13 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000153743.2	rp1l1a-201	7925	2394aa	ENSDARP00000127535.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F630	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000175504.2	rp1l1a-203	2715	295aa	ENSDARP00000144143.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286YAD5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000157039.2	rp1l1a-202	600	62aa	ENSDARP00000129546.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WH37	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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